S3Finder: Fast Pipeline for Search for Unique Sequences in Genomic Data

Bacteria from the Pectobacteriaceae family are dangerous phytopathogens that destroy most of the potato crop. Phage therapy can be used to prevent the death of potato. However, this method requires accurate species identification of the pathogen. In this work, we propose a bioinformatic pipeline that provides a search for species-specific regions in bacterial genomes. The found areas can be used to create primers for PCR analysis.